The University Council is the highest authority of the university. The council holds regular meetings to discuss the general strategy and plans of the university, make decisions on issues that are at authority of the Council and make suggestions to the Ministry of Higher Education and Scientific Research.
| Prof. Dr. Nooraddin Ismail Alla Werdi | University President | Head of Council |
| Assist. Prof. Dr. Hawri Mustafa Bakr | Vice President for Admin and Financial Affairs | Member |
| Prof. Dr. Zhian Mahmoud Dezayee | Vice President for Scientific Affairs and Postgraduate Studies | Member |
| Dr. Karwan Mohammed M-Amen | Vice President for Students Affairs | Member |
| Assist. Prof. Dr. Dashty Abbas Tawfeeq | Dean of the College of Medicine | Member |
| Assist. Prof. Dr. Bassam Karem Amin | Dean of the College of Dentistry | Member |
| Assist. Prof. Dr. Huner Kamal Omer | Dean of the College of Pharmacy | Member |
| Assist. Prof. Dr. Vian Afan Naqshbandi | Dean of the College of Nursing | Member |
| Prof. Dr. Hamdia Mirkhan Ahmed | Dean of the College of Health Sciences | Member |
| Assist. Prof. Dr. Aza Bahadeen Taha | Director General of Medical Research Center | Member |
